buildNhoodGraph: Build an abstracted graph of neighbourhoods for visualization
In MarioniLab/miloR: Differential neighbourhood abundance testing on a graph
View source: R/buildNhoodGraph.R
buildNhoodGraph R Documentation
Build an abstracted graph of neighbourhoods for visualization
Description
Build an abstracted graph of neighbourhoods for visualization
Usage
buildNhoodGraph(x, overlap = 1)
Arguments
x
A Milo object with a non-empty nhoods
slot.
overlap
A numeric scalar that thresholds graph edges based on the number
of overlapping cells between neighbourhoods.
Details
This constructs a weighted graph where nodes represent neighbourhoods and edges represent the number of overlapping
cells between two neighbourhoods.
Value
A Milo object containg an igraph graph in the nhoodGraph slot.
Author(s)
Emma Dann
Examples
NULL
MarioniLab/miloR documentation built on June 4, 2024, 11:55 a.m.
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View source: R/buildNhoodGraph.R
| buildNhoodGraph | R Documentation |
Build an abstracted graph of neighbourhoods for visualization
Description
Build an abstracted graph of neighbourhoods for visualization
Usage
buildNhoodGraph(x, overlap = 1)
Arguments
x |
A |
overlap |
A numeric scalar that thresholds graph edges based on the number of overlapping cells between neighbourhoods. |
Details
This constructs a weighted graph where nodes represent neighbourhoods and edges represent the number of overlapping cells between two neighbourhoods.
Value
A Milo object containg an igraph graph in the nhoodGraph slot.
Author(s)
Emma Dann
Examples
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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