API for MartinBanchero/mpxtractor
Process microplate reader output files into a tidy dataframe
| Global functions | |
|---|---|
| add_col_names | Source code |
| add_column_time | Source code |
| add_concentration | Source code |
| add_plate_file | Source code |
| add_rows_and_columns | Source code |
| add_wave_lenght_col | Source code |
| add_wavelength | Source code |
| are_leading_zeroes_missing | Source code |
| are_leading_zeroes_valid | Source code |
| are_plate_dimensions_valid | Source code |
| are_row_labels_valid | Source code |
| calculate_number_of_plates | Source code |
| check_Na_Inf_in_var_gr | Source code |
| check_arguments_layout | Source code |
| check_col_concentration | Source code |
| check_file_path | Source code |
| check_file_path_layout | Source code |
| check_is_multi_plate | Source code |
| check_layout_file_path | Source code |
| check_one_file_provided | Source code |
| check_read_multiscan_arguments | Source code |
| check_reader | Source code |
| check_that_file_is_non_empty | Source code |
| check_that_only_one_file_is_provided | Source code |
| check_time_interval | Source code |
| check_time_series | Source code |
| check_title | Source code |
| check_type_of_reader | Source code |
| check_unique_plate_names | Source code |
| check_variables | Source code |
| check_well_ids_column_name | Source code Source code |
| check_ws | Source code |
| cleanfile_to_df | Source code |
| color_factor_condition | Source code |
| combine_data_with_layout | Man page Source code |
| combine_list_to_dataframe | Source code |
| combine_subplots_backgr | Source code |
| compute_growth_rates | Man page Source code |
| convert_all_layouts | Source code |
| convert_plate_to_column | Source code |
| convert_seconds_to_hhmmss | Source code |
| cut_into_coordinates | Source code |
| factor_to_color | Source code |
| format_time | Man page Source code |
| format_time_fluorstar | Source code |
| format_time_spectra | Source code |
| generate_color_scale | Source code |
| generate_df | Source code |
| generate_df_result | Source code |
| generate_format_df_fluorstar | Source code |
| generate_plate_names_data_files | Source code |
| generate_plate_names_layout | Source code |
| generate_platemap | Source code |
| generate_subplots_by_well | Source code |
| get_files | Source code |
| get_growth_rates | Source code |
| get_headers | Source code |
| get_input_read_multifiles | Source code |
| get_list_of_plate_layouts | Source code |
| get_plate_size_from_number_of_columns | Source code |
| get_raw_file_clean_fluorstar | Source code |
| get_raw_file_clean_multiscango | Source code |
| get_raw_file_clean_spectramax | Source code |
| get_time_hhmmss | Source code |
| get_time_in_hh | Source code |
| get_time_in_mm | Source code |
| get_time_interval | Source code |
| get_well_ids | Source code |
| get_well_ids_without_leading_zeroes | Source code |
| grobfun | Source code |
| guess_plate_size | Source code |
| impute_rows_with_NA | Source code |
| input_file_is_fluorstar | Source code |
| input_file_is_multiscango | Source code |
| input_file_is_spectramax | Source code |
| join_fluorstar_and_layout | Source code |
| join_multiscango_and_layout | Source code |
| join_spectramax_and_layout | Source code |
| number_of_columns | Source code |
| number_of_rows | Source code |
| parse_abs | Source code |
| parse_group | Source code |
| parse_measure_sec | Source code |
| parse_plate | Source code |
| parse_reading | Source code |
| parse_sample | Source code |
| parse_type | Source code |
| parse_wavelenght | Source code |
| parse_wells | Source code |
| plate_dimensions | Source code |
| plate_file_to_compute_gr | Source code |
| plate_text_to_data_frame | Source code |
| platemap_for_ggplot | Source code |
| plot_gr_microplate | Man page Source code |
| plot_layout_dataframe | Man page Source code |
| plot_layout_file | Man page Source code |
| process_record | Source code |
| read_fluorstar_data | Man page Source code |
| read_layout_file | Man page Source code |
| read_lines | Source code |
| read_multiple_data_files | Man page Source code |
| read_multiscan_list_output | Man page Source code |
| read_multiscango_data | Man page Source code |
| read_multiscango_table_output | Source code |
| read_spectramax_data | Man page Source code |
| reader_df_format | Source code |
| remove_leading_zeroes | Source code |
| save_plot | Source code |
| set_headers_flags | Source code |
| set_well_ids | Source code |
| std_format_df | Source code |
| subplots_annotated | Source code |
| subplots_with_coordinates | Source code |
| trim_white_space | Source code |
| type_of_reader | Source code |
| validate_column_is_in_data | Source code |
| validate_plate | Source code |
| wrong_row_labels_error_message | Source code |
| wrong_wells_error_message | Source code |
