plot_layout_file: Function to plot layout files.

In MartinBanchero/mpxtractor: Process microplate reader output files into a tidy dataframe

Function to plot layout files.

Description

This function recive one file which is the .csv layout file and generate a plot that represents the designed layout of the microplate.

Usage

plot_layout_file(
  file,
  var_shape = NULL,
  var_colour = NULL,
  add_conc = FALSE,
  plate_title = NULL,
  output_filename
)

Arguments

file	The path to a proper .csv layout file.
var_shape	Assign shape to represent one variable
var_colour	Assign colour to other variable
add_conc	This argument is optional, TRUE to add concentration.
plate_title	This argument is optional, add the title.
output_filename	The name of the output file followed by propoer extension, ie. .png

Value

Returns a plot that represents the microplate with the given layout. The plot shows in the x-axis the number of columns and in the y-axis the letter to identified the row.

file format

Note that the .csv layout file needs to be formatted in the correct way. See files in the examples below.

Examples

file_path <- system.file("extdata", "test_layout_file.csv",
  package = "mpxtractor"
)

# Data is store as a tibble
plot_plate <- plot_layout_file(
  file = file_path,
  var_shape = "basic",
  var_colour = "condition",
  add_conc = TRUE,
  plate_title = "My experiment",
  output_filename = "example.png"
)

# Show the plot
plot_plate

MartinBanchero/mpxtractor documentation built on March 30, 2022, 10:56 p.m.