RunSilhouette: RunSilhouette
In MartinLoza/RNAseqAnalysis: RNAseqAnalysis
View source: R/BatchCorrection.R
RunSilhouette R Documentation
RunSilhouette
Description
RunSilhouette
Usage
RunSilhouette(object = NULL, batch = "celltype", reduction = "pca", dims = 10)
Arguments
object
A seurat object to correct batch effects.
batch
Batch labels.
reduction
Reduction to use.
dims
Number of dimensions to use.
Value
Silhouette width score.
MartinLoza/RNAseqAnalysis documentation built on March 18, 2022, 2:13 a.m.
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View source: R/BatchCorrection.R
| RunSilhouette | R Documentation |
RunSilhouette
Description
RunSilhouette
Usage
RunSilhouette(object = NULL, batch = "celltype", reduction = "pca", dims = 10)
Arguments
object |
A seurat object to correct batch effects. |
batch |
Batch labels. |
reduction |
Reduction to use. |
dims |
Number of dimensions to use. |
Value
Silhouette width score.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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