Estimate.true.EDR: Calculating true EDR

Description Usage Arguments Value Author(s)

Description

Calculating true EDR based on a given data with given true DE information.

Usage

1
2
Estimate.true.EDR(Data, status, group.name = c("Control", "Case"), is_DE, FDR,
  filter = T, filter.level = 5)

Arguments

Data

Input pilot data.

status

A vector of group labels.

group.name

A vector of length two. First element is the group name of first group, and the second element is of second group.

is_DE

A vector of True or False which indicate the DE status of each gene.

FDR

FDR level.

filter

Filter genes based on mean counts?

filter.level

Filter the genes with mean counts less than this level.

Value

An object of class list is returned: The object contains a vector of three summary statistics, which are TP_true, TN_true, and EDR_true Each component contains a matrix with target N in row and summary statistics in columns. Summary statistics provided are TP, TN, EDR.

Author(s)

Chien-Wei Lin


MasakiLin/RNASeqDesign documentation built on May 7, 2019, 3:41 p.m.