Description Usage Arguments Value Author(s)
Calculating true EDR based on a given data with given true DE information.
1 2 | Estimate.true.EDR(Data, status, group.name = c("Control", "Case"), is_DE, FDR,
filter = T, filter.level = 5)
|
Data |
Input pilot data. |
status |
A vector of group labels. |
group.name |
A vector of length two. First element is the group name of first group, and the second element is of second group. |
is_DE |
A vector of True or False which indicate the DE status of each gene. |
FDR |
FDR level. |
filter |
Filter genes based on mean counts? |
filter.level |
Filter the genes with mean counts less than this level. |
An object of class list is returned: The object contains a vector of three summary statistics, which are TP_true, TN_true, and EDR_true Each component contains a matrix with target N in row and summary statistics in columns. Summary statistics provided are TP, TN, EDR.
Chien-Wei Lin
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