Man pages for MauerLab/DJExpress
An integrated application for differential splicing analysis and visualization
| dje | dje: Test for Differential Junction Expression |
| DJEanalyze | DJEanalyze: Test for Differential Junction Usage |
| DJEanlz | output object of DJEanalyze function |
| DJEannotate | DJEannotate: Gene annotation for junctions used in... |
| DJEimport | DJEimport: Construction of junction expression matrix |
| DJEplotSplice | DJEplotSplice: Differential junction usage plot |
| DJEprepare | DJEprepare: Filtering junctions for differential expression... |
| DJEspliceRadar | DJEspliceRadar: Radar plot of junction expression vs trait... |
| DJEvsTrait | DJEvsTrait: Junction relationship to external trait |
| goodSamplesJunct | goodSamplesJunct: Iterative filtering of samples and... |
| JAn | JAn: Gene correspondence for splice junctions based on... |
| JCNA1pass | JCNA1pass: 1-pass junction co-expression network analysis. |
| JCNA2pass | JCNA2pass: 2-pass junction co-expression network analysis. |
| JCNAgenePrepare | JCNAGenePrepare: WGCNA annotation for junction expression... |
| JCNAModTrait | JCNAModTrait: Module membership vs. Junction significance... |
| JCNAprepare | JCNAprepare: WGCNA annotation for junction expression-based... |
| topDJE | topDJE: Top table of differentially used junctions |
