DJEspliceRadar: DJEspliceRadar: Radar plot of junction expression vs trait...

In MauerLab/DJExpress: An integrated application for differential splicing analysis and visualization

Description

Interactive plot with top correlated junction expression vs sample traits obtained with DJEvsTrait function.

Usage

DJEspliceRadar(
  DJEvsTrait.out,
  base.junction = NULL,
  topTraits = NULL,
  select.traits = NULL,
  ordered.junction = NULL
)

Arguments

DJEvsTrait.out	output object from DJEvsTrait()
base.junction	vector of junction IDs to be used for trait association
topTraits	numeric: number of top junction-associated traits to be shown in the plot
select.traits	vector of trait names to be shown in the plot
ordered.junction	junction ID for which correlation coefficient values are sorted in descending order in the plot

Value

Interactive highcharts-based radar plot showing top associations between selected junction expression and traits based on correlation coefficients

Examples

DvT <- system.file("extdata", "DvT.rds", package = "DJExpress")
DvT.out <- readRDS(DvT)
Sr.out <- DJEspliceRadar(DvT.out, ordered.junction = "chr1:225688773:225692692:2")

MauerLab/DJExpress documentation built on Jan. 1, 2022, 12:57 p.m.