DJEannotate: DJEannotate: Gene annotation for junctions used in...
In MauerLab/DJExpress: An integrated application for differential splicing analysis and visualization
Description
Usage
Arguments
Value
Examples
Description
Matches junction ID in expression matrix with respective gene name and returns output object for DJEprepare.
Usage
1
DJEannotate(import.out, gtf)
Arguments
import.out
output object from DJEimport()
gtf
Reference transcriptome in genecode gtf file format. Used to define gene ID for junctions
Value
List object containing junction expression and assigned gene IDs
Examples
1
2
3
4
DJEimp <- system.file("extdata", "DJEimp.rds", package = "DJExpress")
imp.out <- readRDS(DJEimp)
gtf0 <- system.file("extdata", "chr1.gtf.gz", package = "DJExpress")
ann.out <- DJEannotate(imp.out, gtf0)
MauerLab/DJExpress documentation built on Jan. 1, 2022, 12:57 p.m.
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Description Usage Arguments Value Examples
Description
Matches junction ID in expression matrix with respective gene name and returns output object for DJEprepare.
Usage
1 | DJEannotate(import.out, gtf)
|
Arguments
import.out |
output object from DJEimport() |
gtf |
Reference transcriptome in genecode gtf file format. Used to define gene ID for junctions |
Value
List object containing junction expression and assigned gene IDs
Examples
1 2 3 4 | DJEimp <- system.file("extdata", "DJEimp.rds", package = "DJExpress")
imp.out <- readRDS(DJEimp)
gtf0 <- system.file("extdata", "chr1.gtf.gz", package = "DJExpress")
ann.out <- DJEannotate(imp.out, gtf0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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