plotEGRET: Create an EGRET-style plot

In McDowellLab/loadflex: Models and Tools for Watershed Flux Estimates

Description

Use loadflex data frames, but create an EGRET plot.

Usage

plotEGRET(plot.name, load.model = NULL, newdata = NULL, data = NULL,
  meta = NULL, eList = NULL, moreTitle = "loadflex",
  plotFlowNorm = FALSE, ...)

Arguments

plot.name	the name of the plot the user wants to create. See Details for current options. For now, only one allowed at time.
load.model	a load model (loadReg2, loadComp, loadInterp, loadLm, etc.) whose data and predictions are to be converted to EGRET format
newdata	data.frame of data used to generate predictions from an already-fitted model
data	data.frame of data used to fit a model. only required if load.model is omitted
meta	loadflex metadata object; it must include constituent, flow, dates, conc.units, site.id, and consti.name. only required if load.model is omitted
eList	an EGRET eList, as output from EGRET or loadflex::convertToEGRET, to override separate inputs of load.model, newdata, data, and/or meta
moreTitle	additional text to include in the fluxBiasMulti plot title. The EGRET default is "WRTDS", so this changes the default to "loadflex".
plotFlowNorm	logical indicating whether or not to plot the normalized flow lines. This defaults to FALSE, which overrides the EGRET default TRUE. Applicable in plotFluxHist and plotConcHist.
...	additional arguments to pass to the plot

Details

EGRET plots that require data, meta:

• boxConcMonth

• plotConcTime

• plotConcQ

• plotFluxQ

EGRET plots that require data, newdata, preds, meta:

• boxQTwice

• multiPlotDataOverview

• plotConcTimeDaily

• plotFluxTimeDaily

• plotConcPred

• plotFluxPred

• plotResidPred

• plotResidQ

• plotResidTime

• boxResidMonth

• boxConcThree

• plotConcHist

• plotFluxHist

• fluxBiasMulti

Examples

# Load necessary data + create the appropriate metadata
data(lamprey_nitrate) # interpolation data (grab sample obs)
fitdat <- lamprey_nitrate

data("lamprey_discharge")
estdat <- lamprey_discharge # estimation data (15 min interval)
estdat <- subset(estdat, DATE < as.POSIXct("2012-10-01 00:00:00", tz="EST5EDT")) 
estdat <- estdat[seq(1, nrow(estdat), by=96/4),] # only keep 4 observations per day

meta <- metadata(
  constituent="NO3", 
  flow="DISCHARGE",
  dates="DATE", 
  conc.units="mg L^-1", 
  flow.units="cfs", 
  load.units="kg",
  load.rate.units="kg d^-1", 
  site.name="Lamprey River, NH",
  site.id="01073500",
  consti.name="Nitrate")

# Run your model and get your predictions
no3_lm <- loadLm(
  formula=log(NO3) ~ log(DISCHARGE), pred.format="conc", 
  data=fitdat, metadata=meta, retrans=exp)

# Now you can plot
plotEGRET("boxConcMonth", data = lamprey_nitrate, meta = meta)
plotEGRET("multiPlotDataOverview", load.model=no3_lm, newdata=estdat)

McDowellLab/loadflex documentation built on May 8, 2019, 9:48 a.m.