get_tip_values: Assign tip values to a tree based on OTU information file.
In McTavishLab/physcraperex: Physcraper Workflow Examples
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Assign tip values to a tree based on OTU information file.
Usage
1
get_tip_values(treefile, otufile)
Arguments
treefile
A character vector with the path to the tree you want to plot in newick format.
otufile
A character vector with the path to the OTU information csv file generated by Physcraper
Value
a list of a phylo object and a vector of tip values
Author(s)
Emily Jane McTavish
Examples
1
2
treefile = 'data/pg_2827_tree6577/run_pg_2827tree6577_run4/RAxML_bestTree.2020-07-31'
otufile = 'data/pg_2827_tree6577/outputs_pg_2827tree6577/otu_info_pg_2827tree6577.csv'
McTavishLab/physcraperex documentation built on April 10, 2021, 12:02 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Assign tip values to a tree based on OTU information file.
Usage
1 | get_tip_values(treefile, otufile)
|
Arguments
treefile |
A character vector with the path to the tree you want to plot in newick format. |
otufile |
A character vector with the path to the OTU information csv file generated by Physcraper |
Value
a list of a phylo object and a vector of tip values
Author(s)
Emily Jane McTavish
Examples
1 2 | treefile = 'data/pg_2827_tree6577/run_pg_2827tree6577_run4/RAxML_bestTree.2020-07-31'
otufile = 'data/pg_2827_tree6577/outputs_pg_2827tree6577/otu_info_pg_2827tree6577.csv'
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.