plot_branches_method1: Plot a tree with branches colored according to molecular...
In McTavishLab/physcraperex: Physcraper Workflow Examples
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Plot a tree with branches colored according to molecular data, method 1
Usage
1
2
3
4
5
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7
8
plot_branches_method1(
x,
tip_label = "otu",
drop_outgroup = TRUE,
ladderize_tree = TRUE,
color = "red",
...
)
Arguments
x
A list from get_tip_values
tip_label
A character vector. Can be one of "otu" or "taxon"
drop_outgroup
Boolean
ladderize_tree
Boolean
Value
a plot
Author(s)
Emily Jane McTavish
Examples
1
2
treefile = 'data/pg_2827_tree6577/run_pg_2827tree6577_run4/RAxML_bestTree.2020-07-31'
otufile = 'data/pg_2827_tree6577/outputs_pg_2827tree6577/otu_info_pg_2827tree6577.csv'
McTavishLab/physcraperex documentation built on April 10, 2021, 12:02 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Plot a tree with branches colored according to molecular data, method 1
Usage
1 2 3 4 5 6 7 8 | plot_branches_method1(
x,
tip_label = "otu",
drop_outgroup = TRUE,
ladderize_tree = TRUE,
color = "red",
...
)
|
Arguments
x |
A list from get_tip_values |
tip_label |
A character vector. Can be one of "otu" or "taxon" |
drop_outgroup |
Boolean |
ladderize_tree |
Boolean |
Value
a plot
Author(s)
Emily Jane McTavish
Examples
1 2 | treefile = 'data/pg_2827_tree6577/run_pg_2827tree6577_run4/RAxML_bestTree.2020-07-31'
otufile = 'data/pg_2827_tree6577/outputs_pg_2827tree6577/otu_info_pg_2827tree6577.csv'
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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