MSstatsPrepareForSummarization: Prepare feature-level data for protein-level summarization

View source: R/utils_summarization_prepare.R

MSstatsPrepareForSummarizationR Documentation

Prepare feature-level data for protein-level summarization

Description

Prepare feature-level data for protein-level summarization

Usage

MSstatsPrepareForSummarization(
  input,
  method,
  impute,
  censored_symbol,
  remove_uninformative_feature_outlier
)

Arguments

input

feature-level data processed by dataProcess subfunctions

method

summarization method - 'summaryMethod' parameter of the dataProcess function

impute

if TRUE, censored missing values will be imputed - 'MBimpute' parameter of the dataProcess function

censored_symbol

censored missing value indicator - 'censoredInt' parameter of the dataProcess function

remove_uninformative_feature_outlier

if TRUE, features labeled as outlier of uninformative by the MSstatsSelectFeatures function will not be used in summarization

Value

data.table

Examples

raw = DDARawData 
method = "TMP"
cens = "NA"
impute = TRUE
MSstatsConvert::MSstatsLogsSettings(FALSE)
input = MSstatsPrepareForDataProcess(raw, 2, NULL)
head(input)


MeenaChoi/MSstats documentation built on July 13, 2024, 10:59 a.m.