API for MeenaChoi/MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Global functions
DDARawData Man page
DDARawData.Skyline Man page
DIARawData Man page
DIAUmpiretoMSstatsFormat Man page Source code
MSstats Man page
MSstats-package Man page
MaxQtoMSstatsFormat Man page Source code
OpenMStoMSstatsFormat Man page Source code
OpenSWATHtoMSstatsFormat Man page Source code
PDtoMSstatsFormat Man page Source code
ProgenesistoMSstatsFormat Man page Source code
SRMRawData Man page
SkylinetoMSstatsFormat Man page Source code
SpectronauttoMSstatsFormat Man page Source code
SpikeInDataLinear Man page
SpikeInDataNonLinear Man page
bilinear Source code
bilinear_LOD Source code
bilinear_LOD_nonlin Source code
cast_maxquant_to_wide_glf Source code
cast_maxquant_to_wide_silac Source code
chechGroupComparisonAgreement Source code
checkMissFeature Source code
checkMissGroupByFeature Source code
checkMissRunByFeature Source code
checkRepeated Source code
checkRunbyFeature Source code
checkSingleFeature Source code
checkSingleSubject Source code
checkTechReplicate Source code
checkUnequalSubject Source code
count.missing.percentage Source code
countMultiRun Source code
dataProcess Man page Source code
dataProcessPlots Man page Source code
designSampleSize Man page Source code
designSampleSizeClassification Man page Source code
designSampleSizeClassificationPlots Man page Source code
designSampleSizePlots Man page Source code
determineSampleSizeinEachGroup Source code
estimableFixedQuantification Source code
estimableFixedQuantificationSurvival Source code
estimableFixedRandom Source code
estimableRandomQuantification Source code
estimateVar Source code
fit.model.single Source code
fit.quantification.run Source code
fun_error Source code
getParameterFixed Source code
getParameterRandom Source code
ggplotColours Source code
groupComparison Man page Source code
groupComparisonPlots Man page Source code
linear Source code
linear_quantlim Man page Source code
make.contrast.based Source code
make.contrast.free Source code
make.contrast.free.single Source code
make.contrast.group.quantification Source code
make.contrast.group.quantification.reference Source code
make.contrast.run.quantification Source code
make.contrast.run.quantification.Survival Source code
make.contrast.run.quantification.reference Source code
make.contrast.subject.quantification Source code
make.contrast.subject.quantification.reference Source code
make.contrast.subject.quantification.single Source code
melt_maxquant_to_long_glf Source code
melt_maxquant_to_long_silac Source code
modelBasedQCPlots Man page Source code
multiplot Source code
nonlinear_quantlim Man page Source code
nvlinear Source code
plot_quantlim Man page Source code
quantification Man page Source code
random.imp Source code
remove_feature_with_few Source code
remove_feature_with_few_progenesis Source code
resultsAsLists Source code
runQuantification Source code
sampleSimulation Source code
second Source code
ter.wls.fit.model Source code
theme_complete_bw Source code
ttest.logsum Source code
MeenaChoi/MSstats documentation built on July 31, 2018, 12:14 p.m.