API for MeenaChoi/MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Global functions
.bilinear Source code
.bilinear_LOD Source code
.bilinear_LOD_nonlin Source code
.cast_maxquant_to_wide_glf Source code
.cast_maxquant_to_wide_silac Source code
.chechGroupComparisonAgreement Source code
.checkMissFeature Source code
.checkMissGroupByFeature Source code
.checkMissRunByFeature Source code
.checkRepeated Source code
.checkRunbyFeature Source code
.checkSingleFeature Source code
.checkSingleSubject Source code
.checkTechReplicate Source code
.checkUnequalSubject Source code
.count.missing.percentage Source code
.countMultiRun Source code
.estimableFixedQuantification Source code
.estimableFixedQuantificationSurvival Source code
.estimableFixedRandom Source code
.estimableRandomQuantification Source code
.fit.model.single Source code
.fit.quantification.run Source code
.fun_error Source code
.getParameterFixed Source code
.getParameterRandom Source code
.ggplotColours Source code
.invlinear Source code
.iter.wls.fit.model Source code
.linear Source code
.make.contrast.based Source code
.make.contrast.free Source code
.make.contrast.free.single Source code
.make.contrast.group.quantification Source code
.make.contrast.group.quantification.reference Source code
.make.contrast.run.quantification Source code
.make.contrast.run.quantification.Survival Source code
.make.contrast.run.quantification.reference Source code
.make.contrast.subject.quantification Source code
.make.contrast.subject.quantification.reference Source code
.make.contrast.subject.quantification.single Source code
.melt_maxquant_to_long_glf Source code
.melt_maxquant_to_long_silac Source code
.multiplot Source code
.remove_feature_with_few Source code
.remove_feature_with_few_progenesis Source code
.runQuantification Source code
.second Source code
.theme_complete_bw Source code
.ttest.logsum Source code
DDARawData Man page
DDARawData.Skyline Man page
DIARawData Man page
DIAUmpiretoMSstatsFormat Man page Source code
MSstats Man page
MSstats-package Man page
MaxQtoMSstatsFormat Man page Source code
OpenMStoMSstatsFormat Man page Source code
OpenSWATHtoMSstatsFormat Man page Source code
PDtoMSstatsFormat Man page Source code
PhilosophertoMSstatsFormat Source code
ProgenesistoMSstatsFormat Man page Source code
SRMRawData Man page
SkylinetoMSstatsFormat Man page Source code
SpectronauttoMSstatsFormat Man page Source code
SpikeInDataLinear Man page
SpikeInDataNonLinear Man page
calc_fvar Source code
dataProcess Man page Source code
dataProcessPlots Man page Source code
designSampleSize Man page Source code
designSampleSizePlots Man page Source code
fit_prot_huber Source code
flag_noninf_data Source code
flag_outlier Source code
groupComparison Man page Source code
groupComparisonPlots Man page Source code
linear_quantlim Man page Source code
modelBasedQCPlots Man page Source code
nonlinear_quantlim Man page Source code
plot_quantlim Man page Source code
quantification Man page Source code
resultsAsLists Source code
MeenaChoi/MSstats documentation built on June 30, 2020, 10:30 a.m.