dot-groupComparisonWithMultipleCores: Perform group comparison per protein in parallel
In MeenaChoi/MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

.groupComparisonWithMultipleCores

R Documentation

Perform group comparison per protein in parallel

Perform group comparison per protein in parallel

.groupComparisonWithMultipleCores(
  summarized_list,
  contrast_matrix,
  save_fitted_models,
  repeated,
  samples_info,
  numberOfCores
)

`summarized_list`	output of MSstatsPrepareForGroupComparison
`contrast_matrix`	contrast matrix
`save_fitted_models`	if TRUE, fitted models will be included in the output
`repeated`	logical, output of checkRepeatedDesign function
`samples_info`	data.table, output of getSamplesInfo function
`numberOfCores`	Number of cores for parallel processing. A logfile named 'MSstats_groupComparison_log_progress.log' is created to track progress. Only works for Linux & Mac OS.

MeenaChoi/MSstats documentation built on April 27, 2024, 7:18 p.m.

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