dot-groupComparisonWithMultipleCores: Perform group comparison per protein in parallel

In MeenaChoi/MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Perform group comparison per protein in parallel

Description

Perform group comparison per protein in parallel

Usage

.groupComparisonWithMultipleCores(
  summarized_list,
  contrast_matrix,
  save_fitted_models,
  repeated,
  samples_info,
  numberOfCores
)

Arguments

summarized_list	output of MSstatsPrepareForGroupComparison
contrast_matrix	contrast matrix
save_fitted_models	if TRUE, fitted models will be included in the output
repeated	logical, output of checkRepeatedDesign function
samples_info	data.table, output of getSamplesInfo function
numberOfCores	Number of cores for parallel processing. A logfile named 'MSstats_groupComparison_log_progress.log' is created to track progress. Only works for Linux & Mac OS.

MeenaChoi/MSstats documentation built on Nov. 30, 2024, 7:26 a.m.