dot-makeConditionPlot: Make condition plot

In MeenaChoi/MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Make condition plot

Description

Make condition plot

Usage

.makeConditionPlot(
  input,
  scale,
  single_protein,
  y.limdown,
  y.limup,
  x.axis.size,
  y.axis.size,
  text.size,
  text.angle,
  legend.size,
  dot.size.condition,
  yaxis.name
)

Arguments

input	data.table
scale	for "ConditionPlot" only, FALSE(default) means each conditional level is not scaled at x-axis according to its actual value (equal space at x-axis). TRUE means each conditional level is scaled at x-axis according to its actual value (unequal space at x-axis).
single_protein	data.table
x.axis.size	size of x-axis labeling for "Run" in Profile Plot and QC Plot, and "Condition" in Condition Plot. Default is 10.
y.axis.size	size of y-axis labels. Default is 10.
text.size	size of labels represented each condition at the top of graph in Profile Plot and QC plot. Default is 4.
text.angle	angle of labels represented each condition at the top of graph in Profile Plot and QC plot or x-axis labeling in Condition plot. Default is 0.
legend.size	size of feature legend (transition-level or peptide-level) above graph in Profile Plot. Default is 7.
dot.size.condition	size of dots in condition plot. Default is 3.

MeenaChoi/MSstats documentation built on Nov. 30, 2024, 7:26 a.m.