makePeptidesDictionary: Prepare a peptides dictionary for global standards...
In MeenaChoi/MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
makePeptidesDictionary R Documentation
Prepare a peptides dictionary for global standards normalization
Description
Prepare a peptides dictionary for global standards normalization
Usage
makePeptidesDictionary(input, normalization)
Arguments
input
'data.table' in MSstats standard format
normalization
normalization method
Details
This function extracts information required to perform normalization
with global standards. It is useful for running the summarization workflow
outside of the dataProcess function.
Examples
input = data.table::as.data.table(DDARawData)
peptides_dict = makePeptidesDictionary(input, "GLOBALSTANDARDS")
head(peptides_dict) # ready to be passed to the MSstatsNormalize function
MeenaChoi/MSstats documentation built on Nov. 10, 2024, 2:43 p.m.
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| makePeptidesDictionary | R Documentation |
Prepare a peptides dictionary for global standards normalization
Description
Prepare a peptides dictionary for global standards normalization
Usage
makePeptidesDictionary(input, normalization)
Arguments
input |
'data.table' in MSstats standard format |
normalization |
normalization method |
Details
This function extracts information required to perform normalization with global standards. It is useful for running the summarization workflow outside of the dataProcess function.
Examples
input = data.table::as.data.table(DDARawData)
peptides_dict = makePeptidesDictionary(input, "GLOBALSTANDARDS")
head(peptides_dict) # ready to be passed to the MSstatsNormalize function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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