dot-runTukey: Fit Tukey median polish

.runTukeyR Documentation

Fit Tukey median polish

Description

Fit Tukey median polish

Usage

.runTukey(input, is_labeled, censored_symbol, remove50missing)

Arguments

input

data.table with data for a single protein

is_labeled

logical, if TRUE, data is coming from an SRM experiment

censored_symbol

Missing values are censored or at random. 'NA' (default) assumes that all 'NA's in 'Intensity' column are censored. '0' uses zero intensities as censored intensity. In this case, NA intensities are missing at random. The output from Skyline should use '0'. Null assumes that all NA intensites are randomly missing.

remove50missing

only for summaryMethod = "TMP". TRUE removes the proteins where every run has at least 50% missing values for each peptide. FALSE is default.

Value

data.table


MeenaChoi/MSstats documentation built on July 13, 2024, 10:59 a.m.