dot-makeComparison: Create comparison plot

In MeenaChoi/MSstats: Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Create comparison plot

Description

Create comparison plot

Usage

.makeComparison(
  input,
  log_base,
  dot.size,
  x.axis.size,
  y.axis.size,
  text.angle,
  hjust,
  vjust,
  y.limdown,
  y.limup
)

Arguments

input	data.table
log_base	2 or 10
dot.size	size of dots in volcano plot and comparison plot. Default is 3.
x.axis.size	size of axes labels, e.g. name of the comparisons in heatmap, and in comparison plot. Default is 10.
y.axis.size	size of axes labels, e.g. name of targeted proteins in heatmap. Default is 10.
text.angle	angle of x-axis labels represented each comparison at the bottom of graph in comparison plot. Default is 0.

MeenaChoi/MSstats documentation built on Nov. 30, 2024, 7:26 a.m.