Man pages for Mengbo-Li/brainClass
Transcriptional Data Guided fMRI Network Classification
| ahba | Processed Allen Human Brain Atlas (AHBA) data |
| brainclass | Transcriptional-data-guided fMRI network classification |
| digsee | Processed DiGSeE scores of relevance to schizophrenia of each... |
| filterGeneExpr | Filter gene expression data by average expression |
| filterGeneSets | Filter gene sets by size and presence of each gene in the... |
| getCVfolds | Get indices of observations assigned to each fold for... |
| getEdgeLabel | Obtain labels of edges in a network |
| getGeneSetEdgeGroup | Construct gene set edge groups for a gene set collection... |
| getROC | Obtain the receiver operating characteristic (ROC) curve |
| getSelectedGroup | Identify feature groups where all fitted coefficients are... |
| gscv7.0 | Gene set collections downloaded from MSigDB v7.0 |
| jaccard | Calculate Jaccard Index of two sets |
| posthoc.edge | Obtain the edgewise post-hoc interpretability metrics |
