gscv7.0: Gene set collections downloaded from MSigDB v7.0

In Mengbo-Li/brainClass: Transcriptional Data Guided fMRI Network Classification

Gene set collections downloaded from MSigDB v7.0

Description

Gene set collections in entrez ID. Downloaded from the MSigDB database version 7.0

Usage

data("gscv7.0", package = "brainClass")

Format

A list object.

gscv7.0

A list object of gene set collections of different types. Here we included 8 different collections, including the positional (by gene location on each chromosome). KEGG pathways, REACTOME pathways, transcription factor targets, immunological signatures and three classes of geno ontology terms (biological processes, cellular components and molecular functions).

References

Liberzon, A., Subramanian, A., Pinchback, R., Thorvaldsdóttir, H., Tamayo, P., & Mesirov, J. P. (2011). Molecular signatures database (MSigDB) 3.0. Bioinformatics, 27(12), 1739-1740.

Examples

data("gscv7.0", package = "brainClass")

Mengbo-Li/brainClass documentation built on March 16, 2023, 12:06 p.m.