MDA: Median disagreement (MDA) plot
In Mengbo-Li/ruvms: Removing Unwanted Variations in Mass-Spectrometry Data.
MDA R Documentation
Median disagreement (MDA) plot
Description
For each measurement, calculate the shift in its median abundance level after
normalisation. The MDA plot is useful when choosing the tuning
parameters.
Usage
MDA(raw, normalised, outline = FALSE, ylim = NULL, guides = NULL, title = NULL)
Arguments
raw
Raw data before normalisation.
normalised
Normalised data.
outline
Logical. Whether to print the outliers.
ylim
The y-axis limits of the output plot.
guides
Numeric. Horizontal dashed lines for reference.
title
Character. Title of the plot.
Value
The MDA plot.
Mengbo-Li/ruvms documentation built on Nov. 14, 2023, 2:11 a.m.
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| MDA | R Documentation |
Median disagreement (MDA) plot
Description
For each measurement, calculate the shift in its median abundance level after
normalisation. The MDA plot is useful when choosing the tuning
parameters.
Usage
MDA(raw, normalised, outline = FALSE, ylim = NULL, guides = NULL, title = NULL)
Arguments
raw |
Raw data before normalisation. |
normalised |
Normalised data. |
outline |
Logical. Whether to print the outliers. |
ylim |
The y-axis limits of the output plot. |
guides |
Numeric. Horizontal dashed lines for reference. |
title |
Character. Title of the plot. |
Value
The MDA plot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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