pooled.sd: Calculate pooled standard deviations for each protein with...
In Mengbo-Li/ruvms: Removing Unwanted Variations in Mass-Spectrometry Data.
pooled.sd R Documentation
Calculate pooled standard deviations for each protein with missing data
Description
The pooled.sd function calculates the pooled standard deviation in
each protein within technical replicates while accommodating possible missing
data. When there is not enough replicates to calculate pooled standard
deviations (number of non-missing samples is less than or equal to number of
groups for example), a simple sample standard deviation is used.
This step is needed when standardise is enabled in ruvms.
Usage
pooled.sd(Y, M)
Arguments
Y
The m-by-n data matrix with samples on the rows and measurements
(proteins etc. ) on the columns. Missing data (NAs) are allowed.
M
The replication structure. See ruv::RUVIII for details.
Value
A numeric vector of pooled standard deviation of each measurement.
Mengbo-Li/ruvms documentation built on Nov. 14, 2023, 2:11 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| pooled.sd | R Documentation |
Calculate pooled standard deviations for each protein with missing data
Description
The pooled.sd function calculates the pooled standard deviation in
each protein within technical replicates while accommodating possible missing
data. When there is not enough replicates to calculate pooled standard
deviations (number of non-missing samples is less than or equal to number of
groups for example), a simple sample standard deviation is used.
This step is needed when standardise is enabled in ruvms.
Usage
pooled.sd(Y, M)
Arguments
Y |
The m-by-n data matrix with samples on the rows and measurements (proteins etc. ) on the columns. Missing data (NAs) are allowed. |
M |
The replication structure. See |
Value
A numeric vector of pooled standard deviation of each measurement.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.