Man pages for MengjunWu/TCseq
Time course sequencing data analysis
| clust.accessors | Accessors to extract slots of a clust class. |
| clust-class | clust class |
| countReads | count mapped reads overlap genomic intervals |
| counts | Extracts counts of a TCA object. |
| countsTable | An example read Counts table |
| DBanalysis | Perform differential expression analysis |
| DBresult | This function tests for differential expression |
| experiment | An example experiment design without BAM file infomration |
| experiment_BAMfile | An example experiment design with BAM file infomration |
| genomicIntervals | An example reference genomic regions |
| peakreference | combine and merge multiple BED files |
| TCA | TCA class and constructor |
| TCA.accessors | Accessors to extract slots of a TCA class. |
| tca_ATAC | An example TCA object |
| timeclust | time couse data clustering |
| timeclustplot | Plot clustering results for time course data. |
| timecourseTable | constructs time course table for clustering analysis |
