GeneAnnotation: GeneAnnotation

In Merguerrero/BasicP: Function to support a microarray data analysis pipeline

Description

Function to annotate genes

Usage

GeneAnnotation(egIDs, anotPackage, toHTML = TRUE, outputDir,
  filename = "annotations", myTitle = "Annotations for all genes analyzed",
  specie = "Homo_sapiens", info2show = c("Affymetrix", "EntrezGene"),
  linksFile, maxGenes = NULL, ...)

Arguments

anotPackage	Annotation package.
toHTML	If TRUE a html file will be created.
outputDir	Path of the file created.
filename	Name of the file
myTitle	Title of ???
specie	Specie
linksFile	Name of the LinksFile

Value

It returns the time that the process least.

Examples

 
## Not run: 
genes2annotate <- entrezs[unique(rownames(fitMain$p.value))]
genesAnnotated <-BasicP::GeneAnnotation(egIDs = genes2annotate, anotPackage = "org.Hs.eg", 
toHTML = TRUE, outputDir = outputDir, filename = "Annotations",  
myTitle = "Annotations for all genes analyzed", specie = "homo sapiens", 
info2show = c( "Affymetrix", "EntrezGene", "GeneSymbol", "GeneName", "KEGG", "GO"), 
linksFile = linksFile, maxGenes = NULL)

## End(Not run)

Merguerrero/BasicP documentation built on May 20, 2019, 2:24 p.m.