R/plot.GSAfisher.mult.R
In Merguerrero/GSAFisherComb: Package to perform a GSAfisher test for a gene-set analysis
Defines functions
plot.GSAfisher.mult
Documented in
plot.GSAfisher.mult
plot.GSAfisher.mult <-
function(x, ...){
options(warn = -1)
qqplot(-log(x$pvalue),rchisq(nrow(x),df=x$DegreesFreedom[1]),xlab="-log(Pvalue)",ylab="-log(distribution)",main="QQ-plot of the GSAfisher test")
qqline(-log(x$pvalue),rchisq(nrow(x),df=x$DegreesFreedom[1]),col=2,distribution = function(p) qchisq(p, df = x$DegreesFreedom[1]))
}
Merguerrero/GSAFisherComb documentation built on May 7, 2019, 3:12 p.m.
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Defines functions plot.GSAfisher.mult
Documented in plot.GSAfisher.mult
plot.GSAfisher.mult <-
function(x, ...){
options(warn = -1)
qqplot(-log(x$pvalue),rchisq(nrow(x),df=x$DegreesFreedom[1]),xlab="-log(Pvalue)",ylab="-log(distribution)",main="QQ-plot of the GSAfisher test")
qqline(-log(x$pvalue),rchisq(nrow(x),df=x$DegreesFreedom[1]),col=2,distribution = function(p) qchisq(p, df = x$DegreesFreedom[1]))
}
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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