Description Usage Arguments Author(s) References
A function that will query https://analysistools.nci.nih.gov/LDlink for a proxy SNP.
1 | ldlink_ldproxy(rsid = NULL, pop = NULL)
|
rsid |
the rsID for the variant to be searched |
pop |
the 1000 Genomes population short code either super population (e.g EUR, EAS, ...) or sub population (e.g. CEU, CHB, ...) |
Murray Cadzow
Machiela MJ, Chanock SJ. LDlink a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants. Bioinformatics. 2015 Jul 2. PMID: 26139635.
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