ldlink_ldproxy: 1000 Genomes LDproxy

Description Usage Arguments Author(s) References

View source: R/ldproxy.R

Description

A function that will query https://analysistools.nci.nih.gov/LDlink for a proxy SNP.

Usage

1
ldlink_ldproxy(rsid = NULL, pop = NULL)

Arguments

rsid

the rsID for the variant to be searched

pop

the 1000 Genomes population short code either super population (e.g EUR, EAS, ...) or sub population (e.g. CEU, CHB, ...)

Author(s)

Murray Cadzow

References

Machiela MJ, Chanock SJ. LDlink a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants. Bioinformatics. 2015 Jul 2. PMID: 26139635.


MerrimanLab/merrimanR documentation built on Aug. 7, 2019, 8:18 a.m.