update_fam: Update plink fam file affection column with specified...

In MerrimanLab/merrimanR: merrimanR

Description

Update plink fam file affection column with specified phenotype/affection.

Usage

update_fam(fam = NULL, pheno_df = NULL, fid_col = NULL,
  iid_col = NULL, pheno_col = NULL)

Arguments

fam	The plink fam file read into R as a data.frame
pheno_df	The data.frame containing the sample ids and phenotypes
fid_col	The column name in pheno_df containing the FIDs
iid_col	The column name in pheno_df containing the IIDs
pheno_col	The column name in pheno_df containing the phenotypes to put into the fam file

Author(s)

Murray Cadzow

MerrimanLab/merrimanR documentation built on Aug. 7, 2019, 8:18 a.m.