Files in MetAnnotate/metannoviz
Process and visualize output from the MetAnnotate pipeline
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/collapse.R
R/colours.R
R/explore.R
R/filter.R
R/load.R
R/metannoviz-package.R
R/normalize.R
R/replicates.R
R/visualize.R
README.md
data-raw/TAXONOMY_NAMING.R
data/TAXONOMY_NAMING.rda
man/choose_discrete_colour_scale.Rd
man/collapse_by_taxon.Rd
man/combine_replicates.Rd
man/create_setup_templates.Rd
man/explore.Rd
man/filter_by_abundance.Rd
man/filter_by_evalue.Rd
man/generate_ggplot.Rd
man/generate_plotting_colours.Rd
man/map_naming_information.Rd
man/metannoviz-package.Rd
man/normalize.Rd
man/process_plotting_colours.Rd
man/read_metannotate_data.Rd
man/summarize_total_reads.Rd
man/summarize_total_reads_all_genes.Rd
man/visualize.Rd
tests/test-data/inputs/dataset_info.tsv
tests/test-data/inputs/hmm_info.tsv
tests/test-data/inputs/rpoB_annotations.tsv
tests/test-data/inputs/rpoB_plotting_colours_family_0.01.tsv
tests/test-data/intermediates/metannotate_data_mapped.R
tests/test-data/intermediates/metannotate_data_mapped.rds
tests/testthat.R
tests/testthat/test-explore.R
tests/testthat/test-load.R
