map_naming_information: Map user information onto metannotate data

In MetAnnotate/metannoviz: Process and visualize output from the MetAnnotate pipeline

Description

Applies user-provided HMM.Family/Dataset naming/length information onto the metannotate data. A few interesting quirks about this function:

• The order of the elements in the provided tables is meaningful. It determines the order of the factor for HMM Dataset names. This dictates the order during plotting

• You can give two elements the same plotting name (e.g., R1 and R2 reads). They will be merged together downstream.

• Only elements in these tables will be used in the script. Any elements you omit from the info tables (e.g., R2 reads, if you don't want to plot these) will be deleted from the metannotate table.

Usage

map_naming_information(
  metannotate_data,
  hmm_naming_info_filename,
  dataset_naming_info_filename
)

Arguments

metannotate_data	Tibble of metannotate data
hmm_naming_info_filename	Filepath to HMM naming template exported from create_setup_templates
dataset_naming_info_filename	Filepath to Dataset naming template exported from create_setup_templates

Value

Tibble of metannotate data (renamed with factors)

MetAnnotate/metannoviz documentation built on Aug. 2, 2020, 3:12 p.m.