Man pages for MetAnnotate/metannoviz
Process and visualize output from the MetAnnotate pipeline
| choose_discrete_colour_scale | Chooses a nice colour scale for a discrete number of entries |
| collapse_by_taxon | Collapses metannotate table to the given taxonomic rank |
| combine_replicates | Combine replicates |
| create_setup_templates | Creates templates for user-specified HMM.Family and Dataset... |
| explore | Explore MetAnnotate data |
| filter_by_abundance | Filter normalized metannotate data by relative abundance |
| filter_by_evalue | Filter metannotate data by e-value |
| generate_ggplot | Generate a ggplot of the MetAnnotate data |
| generate_plotting_colours | Generates colour for a metannotate barplot |
| map_naming_information | Map user information onto metannotate data |
| metannoviz-package | metannoviz: Process and visualize output from the MetAnnotate... |
| normalize | Normalize metannotate data |
| process_plotting_colours | Generates colour for a metannotate barplot or loads... |
| read_metannotate_data | Loads MetAnnotate data table |
| summarize_total_reads | Counts all HMM hits for the gene of interest |
| summarize_total_reads_all_genes | Counts all HMM hits for all genes in the metannotate dataset |
| visualize | Wrapper for convenient generation of MetAnnotate ggplot data |
