configShow: Plot a tree highlighting configurations

In MichelleKendall/phyloTop: Calculating Topological Properties of Phylogenies

Plot a tree highlighting configurations

Description

Plot a tree, highlighting configurations of a given size.

Usage

configShow(tree, configSize, mainCol = "black", configCol = "red", ...)

Arguments

tree	a tree of class phylo4
configSize	an integer giving the configuration size of interest
mainCol	colour for branches which are not in configurations of the chosen size (default is black)
configCol	colour for branches which are in such configurations (default is red)
...	further arguments to be passed to plot.phylo

Value

A plot of the tree, highlighting the configurations of the given size.

Author(s)

Michelle Kendall [e-mail]

Michael Boyd [e-mail]

Examples

## Highlight pitchforks in a random tree with 20 tips:
configShow(rtree(20),3, edge.width=2)

MichelleKendall/phyloTop documentation built on Feb. 1, 2023, 8:07 a.m.