phyloTop | R Documentation |
Calculate a range of topological properties for one or more phylogenetic trees.
phyloTop(treeList, funcs = "all", normalise = FALSE)
treeList |
a |
funcs |
a list of functions. The default is to apply all of the topological functions from the package, but a subset can be specified instead. The functions available are:
|
normalise |
option to normalise the results of functions where possible. Default is |
A matrix where rows correspond to trees and columns correspond to topological properties.
Michelle Kendall michelle.louise.kendall@gmail.com
avgLadder
, cherries
, colless.phylo
, ILnumber
, maxHeight
, pitchforks
, sackin.phylo
, stairs
## Apply all of the functions to a list of 10 random trees, each with 50 tips: phyloTop(rmtree(10,50)) ## Normalising the results where possible: phyloTop(rmtree(10,50), normalise=TRUE)
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