Man pages for MichielNoback/growthis
Loads, analyses and visualises Varioscan data
| available_experiment_dates | serves available experiment start dates of the dataset |
| available_extracts | serves available extracts within the dataset |
| available_strains | serves available strains within the dataset |
| build_model | Builds the model using nls |
| calculate_series_meta_data | Calculates IC50 and IC90 |
| check_remote_for_new_datasets | Reads remote data store and compares to the data collection... |
| create_wide_data | Pivot wider and mutate to match requirements of the... |
| determine_growth_params | Uses 'growthcurver::SummarizeGrowth' to determine growth |
| determine_yield | Not exported helper function |
| do_growth_analysis | Perform growth analysis on a varioscan data set |
| exclude_data | not exported helper function to exclude specific wells or... |
| experiment_data | The experiments, with their dates and descriptions |
| filter_data | Filter Varioscan data |
| get_clickable_plate_layout | Adds glyphicons to a given plate layout |
| get_new_glyph | returns new glyph depending on the glyph that was clicked |
| get_plate_layout | returns the plate layout belonging to the given experiment |
| get_selected_wells | serves a list of selected wells, to be used for downstram... |
| get_ui_glyphs | serves UI glyphs of the well selection editor box |
| load_selected_experiment | Loads a single experiment from Rda file (from package package... |
| message_helper | helper for creating messages |
| metadata | Constructor for the metadata object that will be part of the... |
| model_dose_response | Models the yield as a function of dilution |
| pipe | Imports the pipe operator |
| plot_dependent_var_over_concentration | Plots one of a few selected parameters over concentration |
| plot_growthcurves | Plots varioscan data in growth curves. |
| plot_growth_statistics | Create a heatmap of growth statistics |
| prepare_stats_data_download | prepares the growth parameters dataframe, as |
| process_raw_time_point_block | Processes a single time-point block Not exported helper... |
| read_experiment_data | Reads experiment names to be used in the app |
| read_varioscan | Reads Varioscan data from Excel |
| remove_extreme_yield_outliers | removes extreme outliers with respect to yield because of... |
| shiny_app | starts the shiny app |
| shiny_app_ui | The main UI function |
| varioscan | Constructor for varioscan data object |
