plot_growthcurves: Plots varioscan data in growth curves.

In MichielNoback/growthis: Loads, analyses and visualises Varioscan data

Plots varioscan data in growth curves.

Description

Support currently for three types of visualizations: Only average (line plot), all three replicates separately, and a ribbon plot with the average of the three replicates. In the ribbon plot the lower and upper bounds represent the minimum and maximum values of the replicates. The upper panel shows the corrected OD values and the lower panel shows the Control series.

Usage

plot_growthcurves(varioscan_data, plot_type = "ribbon")

Arguments

varioscan_data	all data in long format
plot_type	a character, one of c("replicates", "avg", "ribbon"). See details

Details

plot_type The plot_type parameter can be one of c("replicates", "avg", "limits") and controls which data will be displayed:

ribbon

the average as line and the maximum and minimum as ribbon

replicates

the individual three replicates

average

only the average of each series

MichielNoback/growthis documentation built on Jan. 4, 2023, 10:30 a.m.