experiment_data: The experiments, with their dates and descriptions
In MichielNoback/growthis: Loads, analyses and visualises Varioscan data
experiment_data R Documentation
The experiments, with their dates and descriptions
Description
There are multiple indivdual datasets available that are not documented individually.
They are identified by their run date, e.g. growthis::\\12-11-2021\“. Simply type growthis:: in the console to discover them, or use the Shiny app.
Usage
experiment_data
Format
A tibble frame with 20,928 rows and 10 variables, in long format
- file_name
the name of the excel file with raw varioscan data and experiment metadata
- experiment_date
the date on which the experimen was run. This identifies the dataset uniquely
- description
A short description of the experiment
All individual datasets have this format:
The plate has a 8 rows * 12 columns layout.
The experiments were set up in three blocks of 4 columns each, see picture below.
A tibble frame with 20,928 rows and 10 variables, in long format
- dilution
the dilution of the extract that was added
- series
the series; one of three (each 4 columns)
- replicate
the replicate; can be 1/2/3 for raw measurements, C for control (column 4 of each series), 1C/2C/3C for corrected measurements or Avg for the average of 1C/2C/3C
- OD
the OD; either raw or corrected
- duration
the duration; a lubridate Duration object. Increases in 10m intervals
- start_date
a lubridate Date object.the start date of the experiment
- strain
the bacterial strain used in the growth experiment
- extract
the extract used for the dilution series
- extract_id
the the ID of the extract
- buffer_strength
the strength of the medium buffer
- pH_buffer
the initial pH of the medium
MichielNoback/growthis documentation built on Jan. 4, 2023, 10:30 a.m.
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| experiment_data | R Documentation |
The experiments, with their dates and descriptions
Description
There are multiple indivdual datasets available that are not documented individually.
They are identified by their run date, e.g. growthis::\\12-11-2021\“. Simply type growthis:: in the console to discover them, or use the Shiny app.
Usage
experiment_data
Format
A tibble frame with 20,928 rows and 10 variables, in long format
- file_name
the name of the excel file with raw varioscan data and experiment metadata
- experiment_date
the date on which the experimen was run. This identifies the dataset uniquely
- description
A short description of the experiment
All individual datasets have this format:
The plate has a 8 rows * 12 columns layout.
The experiments were set up in three blocks of 4 columns each, see picture below.
A tibble frame with 20,928 rows and 10 variables, in long format
- dilution
the dilution of the extract that was added
- series
the series; one of three (each 4 columns)
- replicate
the replicate; can be 1/2/3 for raw measurements, C for control (column 4 of each series), 1C/2C/3C for corrected measurements or Avg for the average of 1C/2C/3C
- OD
the OD; either raw or corrected
- duration
the duration; a lubridate Duration object. Increases in 10m intervals
- start_date
a lubridate Date object.the start date of the experiment
- strain
the bacterial strain used in the growth experiment
- extract
the extract used for the dilution series
- extract_id
the the ID of the extract
- buffer_strength
the strength of the medium buffer
- pH_buffer
the initial pH of the medium
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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