memc_configure: Set up a model configuration

In Microbial-Explicit-Model/MEMC: Microbial Explicit Model Comparison

Set up a model configuration

Description

Set up a model configuration

Usage

memc_configure(
  params,
  state,
  name = "unnamed",
  DOMuptake = "MM",
  POMdecomp = "MM",
  MBdecay = "LM"
)

Arguments

params	data.table containing the following columns: parameter, value, and units.
state	a vector of the initial state values, must be named
name	string name of the model configuration, default set to "MEND".
DOMuptake	string indicating the dynamics used to model microbial decomposition of DOM, one of the following "MM", "RMM", or "ECA"
POMdecomp	string indicating the dynamics used to model microbial decomposition of POM, one of the following "MM", "RMM", "ECA", or "LM"
MBdecay	string indicating microbial decay, one of the following ""LM" or "DD"

Value

memc_single_config object of the name, dynamics, parameters and starting state values

See Also

Other helper functions: memc_update_config(), memc_update_params(), update_state()

Examples

# Modify the MEND model
m <- MEND_config
m_mod <- memc_configure(m$params, m$state, "MEND_modified", POMdecomp = "LM")
summary(m_mod)
memc_solve(m_mod, 0:10)

Microbial-Explicit-Model/MEMC documentation built on April 12, 2025, 12:50 p.m.