extract_species: Internal helper function to extract most contributing species...

In MikkoVihtakari/veganUtils: Utility functions and extensions to vegan and ggvegan

Internal helper function to extract most contributing species from vegan's cca and rda objects

Description

Internal helper function to extract most contributing species from vegan's cca and rda objects

Usage

extract_species(mod, axis, sides, species, n)

Arguments

mod	cca or rda object
axis	The ordination axis for which the extraction should be made for
sides	Character vector specifying which columns should be shown. Options: "both" shows n/2 from both sides of the axis ordered by species scores; "contrib" orders the species based on "contributions" to the axis (squared species scores); pos orders the species based on the species score to the axis and "neg" orders the species based on the inverted species score to the axis.
species	A character vector of species entries to be forced to the plot. The remaining of species will be taken from sides and n arguments.
n	Number of columns (=species) to show

Author(s)

Mikko Vihtakari

MikkoVihtakari/veganUtils documentation built on May 3, 2023, 9:58 a.m.