pattern_plot | R Documentation |
ggplot2 based facet_grid to examine patterns in multivariate data
pattern_plot(
mod,
axis = 1,
sides = "both",
n = 10,
species = NULL,
expls = NULL,
log_trans = FALSE,
X = NULL,
Y = NULL
)
mod |
|
axis |
ordination axis, which should be used for the plot |
sides |
Character vector specifying which columns should be shown. Options: |
n |
integer giving the number of species that should be plotted. Species are chosen based on contribution to |
species |
character vector specifying the species names that should be forced to the plot. Any missing species will be taken from the |
expls |
character vector specifying the environmental/explanatory variable names that should be used in the plot. If |
log_trans |
logical indicating whether species values should be logarithm + 1 transformed before plotting. |
X |
optional species data frame. If |
Y |
optional constraining variable data frame. If |
Mikko Vihtakari
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