README.md

In MilesLab/ADARR: ADAR R Package

The ADARR R package is contains functions for annotating results from the Sprint RNA editing pipeline.

https://github.com/jumphone/SPRINT

This annotates each site with the gene identities, genomic regions, and repeat elements overlapping with the sites. This can be integrated with pre-exisiting command line pipelines.

Using this package requires the GenomicRanges Bioconductor package. This can be obtained as follows.

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicRanges")

This R package can be installed via Github as follows.

install.packages("devtools")
library(devtools)
devtools::install_github("MilesLab/ADARR")

Of note, this package requires alignment to the hg38 human genome. Other annotations may be available in the future.

Documentation for the functions of ADARR are provided here.

https://github.com/MilesLab/ADARR/raw/main/ADARR_0.1.0.pdf

MilesLab/ADARR documentation built on Dec. 17, 2021, 4:16 a.m.