annotate_regions: A function to intersect user region data with annotation data...

In MilesLab/ADARR: ADAR R Package

Description

A function to intersect user region data with annotation data Taken from annotatr package Annotate genomic regions to selected genomic annotations while preserving the data associated with the genomic regions.

Usage

annotate_regions(
  regions,
  annotations = hg38_annotations,
  minoverlap = 1L,
  ignore.strand = TRUE,
  quiet = FALSE
)

Arguments

regions	The GRanges object to annotate
annotations	The annotations to overlap with
minoverlap	A scalar, positive integer, indicating the minimum required overlap of regions with annotations.
ignore.strand	Logical indicating whether strandedness should be respected in findOverlaps(). Default FALSE.
quiet	Print progress messages (FALSE) or not (TRUE). ' @export

MilesLab/ADARR documentation built on Dec. 17, 2021, 4:16 a.m.