SIR_LNA_ESlice_MCMC: theta1 theta2 Trajectory matrix: in log-scale state Initial...
In MingweiWilliamTang/LNAphyloDyn: Bayesian inference on coalescent-based phylodynamics using linear noise approximation

Infectious rate and recovery rate: theta1, theta2 Scale parameter: lambda

1 2	SIR_LNA_ESlice_MCMC(state, Init, times, gridsize = 100, niter = 1000, burn = 500, thin = 5)

prior s1: s1 = theta1 log(1/s1) ~ gamma(50,5) propose function random walk Uniform[-0.5,0.5] on log space

s2: theta2/theta1 proposal function: random walk Uniform[-0.5,0.5] Normal(20000,2000)

lambda log(lambda) ~ gamma(16,4) propose random walk uniform [-0.5,0.5] on logspace

MingweiWilliamTang/LNAphyloDyn documentation built on Oct. 23, 2019, 11:56 a.m.

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