Figuremaking_BES_presentation.R
In MirzaCengic/Amphibians:
# Script for making slide figure for 2018 BES Macro presentation
pacman::p_load(raster, tidyverse, Rahat, data.table, sf)
#### Slide with the first explanation of graph ####
# Basic plot setup
plot_basic <- ggplot() +
geom_hline(yintercept = 0,
size = 0.5,
color = "grey80",
# alpha = 0.75,
# linetype = "dashed",
NULL) +
geom_vline(xintercept = 0,
size = 0.5,
# alpha = 0.75,
color = "grey80",
# linetype = "dashed",
NULL) +
theme_minimal() +
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_line(linetype = "dashed"),
panel.background = element_blank(),
axis.text = element_text(size = 14),
axis.title = element_text(size = 18),
plot.margin=unit(c(1,1,1.5,1.2),"cm"),
# axis.line = element_line(colour = "black"),
NULL) +
labs(x = "Decrease (%) Increase (%)\nCombined effect",
y = "Additive effect\nDecrease (%) Increase (%)") +
xlim(-100, 100) +
ylim(-100, 100)
# First explanation slide, with faint labels
r_intro1 <- plot_basic +
geom_segment(aes(x = -100, xend = -100, y = -0, yend = -90), size = 2, alpha = 0.2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = -0, xend = -90), size = 2, alpha = 0.2,# LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(x = -100, xend = -100, y = 0, yend = 100), size = 2, alpha = 0.2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = 0, xend = 100), size = 2, alpha = 0.2, # LLR
arrow = arrow(length = unit(0.5, "cm"))) +
annotate("text", x = 0, y = 0,
label = c("What are the additive\nand combined effects of\nclimate and land use change\non amphibian biodiversity?"),
color = "#B82B22", size = 10, fontface = "bold") +
theme(
axis.title = element_text(color = "grey70"),
axis.text = element_text(color = "grey70")
)
r_intro0 <- plot_basic +
annotate("text", x = 0, y = 60,
label = "Question?",
color = "#B82B22", size = 14, fontface = "bold") +
theme(
axis.title = element_text(color = "grey90"),
axis.text = element_text(color = "grey90")
)
r_intro0b <- r_intro0 +
annotate("text", x = 0, y = -20,
label = c("What are the additive\nand combined effects of\nclimate and land use change\non amphibian biodiversity?"),
color = "#B82B22", size = 10, fontface = "bold")
# r_intro1b
# Second figure where labels come out
# First explanation slide, with faint labels
r_intro2 <- plot_basic +
geom_segment(aes(x = -100, xend = -100, y = -3, yend = -90), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = -3, xend = -90), size = 2,# LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(x = -100, xend = -100, y = 3, yend = 100), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = 3, xend = 100), size = 2, # LLR
arrow = arrow(length = unit(0.5, "cm"))) +
annotate("text", x = 0, y = 0,
label = c("What are the additive\nand combined effects of\nclimate and land use change\non amphibian biodiversity?"),
color = "#B82B22", size = 10, fontface = "bold", alpha = 0.5)
# r_intro1
# r_intro2
####################################
# Slide with second explanation of graph
# Third one would be what's on the each side of the 1:1 line
r_intro3 <- plot_basic +
geom_segment(aes(x = -100, xend = -100, y = -3, yend = -90), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = -3, xend = -90), size = 2,# LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(x = -100, xend = -100, y = 3, yend = 100), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = 3, xend = 100), size = 2, # LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_abline(size = 0.2,
color = "grey30",
linetype = "dashed") +
annotate("text",
x = c(-42, -21, # LL
45, 90, # UR
-45, -22, # UL
42, 75), # LR
y = c(-25, -29,
87, 83,
85, 74,
-25, -18),
label = c("Combined", "Additive", "Combined", "Additive",
"Combined", "Additive", "Combined", "Additive"), color = "black",
angle = 45, size = 8) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-30, 55, 55, -30),
# label = c("C A", "C A",
# "C A", "C A"), color = "black", size = 9) +
annotate("text", x = c(-50, 50, -50, 50), y = c(-50, 50, 50, -50),
label = c("--", "++", "+-", "-+"), color = "#B82B22", size = 50, fontface = "bold") +
NULL
# r_intro2
# r_intro3
# With focus on the plus plus part
r_intro4 <- r_intro3 +
geom_rect(aes(xmin = 5, xmax = 95, ymin = 16, ymax = 62),
fill = "transparent", color = "grey20", size = 2)
####
# r_intro1
# r_intro2
# r_intro3
# r_intro4
#
#### Zoomed in figure
r_intro_zoomed1 <- ggplot() +
# geom_hline(yintercept = 0,
# size = 0.5,
# color = "grey50",
# # linetype = "dashed",
# NULL) +
# geom_vline(xintercept = 0,
# size = 0.5,
# color = "grey50",
# # linetype = "dashed",
# NULL) +
geom_segment(aes(x = 0, xend = 0, y = 3, yend = 100), size = 1, color = "grey20",
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = 0, yend = 0, x = 3, xend = 100), size = 1, color = "grey20",
arrow = arrow(length = unit(0.5, "cm"))) +
geom_abline(size = 0.2,
color = "grey30",
linetype = "dashed") +
theme_minimal() +
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_line(linetype = "dashed"),
panel.background = element_blank(),
axis.text = element_text(size = 14),
axis.title = element_text(size = 18),
plot.margin=unit(c(1,1,1.5,1.2),"cm"),
# axis.line = element_line(colour = "black"),
NULL) +
labs(x = "Increase (%)\nCombined effect",
y = "Additive effect\nIncrease (%)") +
xlim(0, 100) +
ylim(0, 100)
triangle_x <- data.table(group = c(1,1,1),
polygon.x = c(0,100,100),
polygon.y = c(0,100,0))
triangle_y <- data.table(group = c(1,1,1),
polygon.x = c(0,100,0),
polygon.y = c(100,100,0))
#fc8d59
#ffffbf
#91bfdb
r_intro_zoomed2 <- r_intro_zoomed1 +
geom_polygon(data = triangle_y, aes(x = polygon.x,y = polygon.y, group = group),
fill = "#fc8d59",
alpha = 0.5
)
r_intro_zoomed2b <- r_intro_zoomed2 +
annotate("text", x = 40, y = 60,
label = "Additive effect\ngreater than combined",
color = "grey30",
angle = 40,
size = 10)
# r_intro_zoomed2
r_intro_zoomed3 <- r_intro_zoomed2b +
geom_polygon(data = triangle_x, aes(x = polygon.x,y = polygon.y, group = group),
fill = "#91bfdb",
alpha = 0.5)
r_intro_zoomed3b <- r_intro_zoomed3 +
annotate("text", x = 62, y = 40,
label = "Combined effect\ngreater than additive",
color = "grey30",
angle = 41,
size = 10,
NULL)
# 3b
# r_intro_zoomed3b +
# geom_abline(size = 0.5,
# color = "grey30"
# ,
# linetype = "dashed"
# )
#### Preview
# r_intro1
# r_intro2
# r_intro3
# r_intro4
# ##
# r_intro_zoomed1
# r_intro_zoomed2
# r_intro_zoomed2b
# r_intro_zoomed3
# r_intro_zoomed3b
# Saving intro figure slides
# 1
# ggsave(filename = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro1.png" %>%
# milkunize2(),
# plot = r_intro1,
# dpi = 600,
# NULL)
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro1.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro1
dev.off()
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro0.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro0
dev.off()
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro0b.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro0b
dev.off()
# 2
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro2.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro2
dev.off()
# 3
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro3.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro3
dev.off()
# 4
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro4.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro4
dev.off()
# Saving zoomed ones
# 1
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed1.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed1
dev.off()
# 2
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed2.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed2
dev.off()
# 2b
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed2b.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed2b
dev.off()
# 3
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed3.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed3
dev.off()
# 3b
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed3b.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed3b
dev.off()
##################################
# Remaking the plots
p <- ggplot() +
geom_hline(yintercept = 0,
size = 0.5,
color = "grey80",
# alpha = 0.75,
# linetype = "dashed",
NULL) +
geom_vline(xintercept = 0,
size = 0.5,
# alpha = 0.75,
color = "grey80",
# linetype = "dashed",
NULL) +
geom_abline(size = 0.2, linetype = "dashed") +
# geom_point() +
theme_minimal() +
# scale_color_jco() +
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_line(linetype = "dashed"),
panel.background = element_blank(),
axis.text = element_text(size = 14),
axis.title = element_text(size = 18),
plot.margin=unit(c(1,1,1.5,1.2),"cm"),
# legend.position = "top",
# axis.line = element_line(colour = "black"),
NULL) +
labs(x = "Decrease (%) Increase (%)\nCombined effect",
y = "Additive effect\nDecrease (%) Increase (%)") +
xlim(-100, 100) +
ylim(-100, 100) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-25, 55, 55, -25),
# label = c("Combined\nAdditive", "Combined\nAdditive",
# "Combined\nAdditive", "Combined\nAdditive"), color = "black",
# angle = 90, size = 4) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-30, 55, 55, -30),
# label = c("C A", "C A",
# "C A", "C A"), color = "black", size = 9) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-40, 40, 40, -40),
# label = c("--", "++", "+-", "-+"), color = "#B82B22", size = 26, fontface = "bold") +
NULL
triangle_x1 <- data.table(group = c(1,1,1),
polygon.x = c(0,100,100),
polygon.y = c(0,100,0))
triangle_y1 <- data.table(group = c(1,1,1),
polygon.x = c(0,100,0),
polygon.y = c(100,100,0))
#
triangle_x2 <- data.table(group = c(1,1,1),
polygon.x = c(-100,0, 0),
polygon.y = c(-100,-100,0))
triangle_y2 <- data.table(group = c(1,1,1),
polygon.x = c(-100,-100,0),
polygon.y = c(0,-100,0))
#
triangle_x3 <- data.table(group = c(1,1,1),
polygon.x = c(-100,-100, 0),
polygon.y = c(100,0,0))
triangle_y3 <- data.table(group = c(1,1,1),
polygon.x = c(-100, 0, 0),
polygon.y = c(100, 100,0))
#
triangle_x4 <- data.table(group = c(1,1,1),
polygon.x = c(0, 100, 0),
polygon.y = c(0, -100, -100))
triangle_y4 <- data.table(group = c(1,1,1),
polygon.x = c(0, 100, 100),
polygon.y = c(0, 0, -100))
####
blue <- "#91bfdb"
red <- "#fc8d59"
p1 <- p +
geom_polygon(data = triangle_y1, aes(x = polygon.x,y = polygon.y, group = group),
fill = red,
alpha = 0.5) +
geom_polygon(data = triangle_x1, aes(x = polygon.x,y = polygon.y, group = group),
fill = blue,
alpha = 0.5) +
geom_polygon(data = triangle_y2, aes(x = polygon.x,y = polygon.y, group = group),
fill = red,
alpha = 0.5) +
geom_polygon(data = triangle_x2, aes(x = polygon.x,y = polygon.y, group = group),
fill = blue,
alpha = 0.5) +
# geom_polygon(data = triangle_y3, aes(x = polygon.x,y = polygon.y, group = group),
# fill = blue,
# alpha = 0.5) +
# geom_polygon(data = triangle_x3, aes(x = polygon.x,y = polygon.y, group = group),
# fill = red,
# alpha = 0.5) +
# geom_polygon(data = triangle_y4, aes(x = polygon.x,y = polygon.y, group = group),
# fill = blue,
# alpha = 0.5) +
# geom_polygon(data = triangle_x4, aes(x = polygon.x,y = polygon.y, group = group),
# fill = red,
# alpha = 0.5) +
NULL
p1 + annotate("text", x = -20, y = 20,
label = "Additive effect\ngreater than combined",
color = "grey30",
angle = 45,
size = 10)
r_intro_zoomed2b <- r_intro_zoomed2 +
annotate("text", x = 40, y = 60,
label = "Additive effect\ngreater than combined",
color = "grey30",
angle = 40,
size = 10)
# r_intro_zoomed2
r_intro_zoomed3 <- r_intro_zoomed2b
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# Script for making slide figure for 2018 BES Macro presentation
pacman::p_load(raster, tidyverse, Rahat, data.table, sf)
#### Slide with the first explanation of graph ####
# Basic plot setup
plot_basic <- ggplot() +
geom_hline(yintercept = 0,
size = 0.5,
color = "grey80",
# alpha = 0.75,
# linetype = "dashed",
NULL) +
geom_vline(xintercept = 0,
size = 0.5,
# alpha = 0.75,
color = "grey80",
# linetype = "dashed",
NULL) +
theme_minimal() +
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_line(linetype = "dashed"),
panel.background = element_blank(),
axis.text = element_text(size = 14),
axis.title = element_text(size = 18),
plot.margin=unit(c(1,1,1.5,1.2),"cm"),
# axis.line = element_line(colour = "black"),
NULL) +
labs(x = "Decrease (%) Increase (%)\nCombined effect",
y = "Additive effect\nDecrease (%) Increase (%)") +
xlim(-100, 100) +
ylim(-100, 100)
# First explanation slide, with faint labels
r_intro1 <- plot_basic +
geom_segment(aes(x = -100, xend = -100, y = -0, yend = -90), size = 2, alpha = 0.2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = -0, xend = -90), size = 2, alpha = 0.2,# LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(x = -100, xend = -100, y = 0, yend = 100), size = 2, alpha = 0.2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = 0, xend = 100), size = 2, alpha = 0.2, # LLR
arrow = arrow(length = unit(0.5, "cm"))) +
annotate("text", x = 0, y = 0,
label = c("What are the additive\nand combined effects of\nclimate and land use change\non amphibian biodiversity?"),
color = "#B82B22", size = 10, fontface = "bold") +
theme(
axis.title = element_text(color = "grey70"),
axis.text = element_text(color = "grey70")
)
r_intro0 <- plot_basic +
annotate("text", x = 0, y = 60,
label = "Question?",
color = "#B82B22", size = 14, fontface = "bold") +
theme(
axis.title = element_text(color = "grey90"),
axis.text = element_text(color = "grey90")
)
r_intro0b <- r_intro0 +
annotate("text", x = 0, y = -20,
label = c("What are the additive\nand combined effects of\nclimate and land use change\non amphibian biodiversity?"),
color = "#B82B22", size = 10, fontface = "bold")
# r_intro1b
# Second figure where labels come out
# First explanation slide, with faint labels
r_intro2 <- plot_basic +
geom_segment(aes(x = -100, xend = -100, y = -3, yend = -90), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = -3, xend = -90), size = 2,# LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(x = -100, xend = -100, y = 3, yend = 100), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = 3, xend = 100), size = 2, # LLR
arrow = arrow(length = unit(0.5, "cm"))) +
annotate("text", x = 0, y = 0,
label = c("What are the additive\nand combined effects of\nclimate and land use change\non amphibian biodiversity?"),
color = "#B82B22", size = 10, fontface = "bold", alpha = 0.5)
# r_intro1
# r_intro2
####################################
# Slide with second explanation of graph
# Third one would be what's on the each side of the 1:1 line
r_intro3 <- plot_basic +
geom_segment(aes(x = -100, xend = -100, y = -3, yend = -90), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = -3, xend = -90), size = 2,# LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(x = -100, xend = -100, y = 3, yend = 100), size = 2,# lower left left
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = -100, yend = -100, x = 3, xend = 100), size = 2, # LLR
arrow = arrow(length = unit(0.5, "cm"))) +
geom_abline(size = 0.2,
color = "grey30",
linetype = "dashed") +
annotate("text",
x = c(-42, -21, # LL
45, 90, # UR
-45, -22, # UL
42, 75), # LR
y = c(-25, -29,
87, 83,
85, 74,
-25, -18),
label = c("Combined", "Additive", "Combined", "Additive",
"Combined", "Additive", "Combined", "Additive"), color = "black",
angle = 45, size = 8) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-30, 55, 55, -30),
# label = c("C A", "C A",
# "C A", "C A"), color = "black", size = 9) +
annotate("text", x = c(-50, 50, -50, 50), y = c(-50, 50, 50, -50),
label = c("--", "++", "+-", "-+"), color = "#B82B22", size = 50, fontface = "bold") +
NULL
# r_intro2
# r_intro3
# With focus on the plus plus part
r_intro4 <- r_intro3 +
geom_rect(aes(xmin = 5, xmax = 95, ymin = 16, ymax = 62),
fill = "transparent", color = "grey20", size = 2)
####
# r_intro1
# r_intro2
# r_intro3
# r_intro4
#
#### Zoomed in figure
r_intro_zoomed1 <- ggplot() +
# geom_hline(yintercept = 0,
# size = 0.5,
# color = "grey50",
# # linetype = "dashed",
# NULL) +
# geom_vline(xintercept = 0,
# size = 0.5,
# color = "grey50",
# # linetype = "dashed",
# NULL) +
geom_segment(aes(x = 0, xend = 0, y = 3, yend = 100), size = 1, color = "grey20",
arrow = arrow(length = unit(0.5, "cm"))) +
geom_segment(aes(y = 0, yend = 0, x = 3, xend = 100), size = 1, color = "grey20",
arrow = arrow(length = unit(0.5, "cm"))) +
geom_abline(size = 0.2,
color = "grey30",
linetype = "dashed") +
theme_minimal() +
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_line(linetype = "dashed"),
panel.background = element_blank(),
axis.text = element_text(size = 14),
axis.title = element_text(size = 18),
plot.margin=unit(c(1,1,1.5,1.2),"cm"),
# axis.line = element_line(colour = "black"),
NULL) +
labs(x = "Increase (%)\nCombined effect",
y = "Additive effect\nIncrease (%)") +
xlim(0, 100) +
ylim(0, 100)
triangle_x <- data.table(group = c(1,1,1),
polygon.x = c(0,100,100),
polygon.y = c(0,100,0))
triangle_y <- data.table(group = c(1,1,1),
polygon.x = c(0,100,0),
polygon.y = c(100,100,0))
#fc8d59
#ffffbf
#91bfdb
r_intro_zoomed2 <- r_intro_zoomed1 +
geom_polygon(data = triangle_y, aes(x = polygon.x,y = polygon.y, group = group),
fill = "#fc8d59",
alpha = 0.5
)
r_intro_zoomed2b <- r_intro_zoomed2 +
annotate("text", x = 40, y = 60,
label = "Additive effect\ngreater than combined",
color = "grey30",
angle = 40,
size = 10)
# r_intro_zoomed2
r_intro_zoomed3 <- r_intro_zoomed2b +
geom_polygon(data = triangle_x, aes(x = polygon.x,y = polygon.y, group = group),
fill = "#91bfdb",
alpha = 0.5)
r_intro_zoomed3b <- r_intro_zoomed3 +
annotate("text", x = 62, y = 40,
label = "Combined effect\ngreater than additive",
color = "grey30",
angle = 41,
size = 10,
NULL)
# 3b
# r_intro_zoomed3b +
# geom_abline(size = 0.5,
# color = "grey30"
# ,
# linetype = "dashed"
# )
#### Preview
# r_intro1
# r_intro2
# r_intro3
# r_intro4
# ##
# r_intro_zoomed1
# r_intro_zoomed2
# r_intro_zoomed2b
# r_intro_zoomed3
# r_intro_zoomed3b
# Saving intro figure slides
# 1
# ggsave(filename = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro1.png" %>%
# milkunize2(),
# plot = r_intro1,
# dpi = 600,
# NULL)
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro1.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro1
dev.off()
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro0.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro0
dev.off()
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro0b.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro0b
dev.off()
# 2
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro2.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro2
dev.off()
# 3
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro3.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro3
dev.off()
# 4
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro4.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro4
dev.off()
# Saving zoomed ones
# 1
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed1.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed1
dev.off()
# 2
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed2.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed2
dev.off()
# 2b
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed2b.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed2b
dev.off()
# 3
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed3.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed3
dev.off()
# 3b
svg(file = "Projects/Amphibians/Documents/Presentations/BES_Macro_2018/slide_figs/r_intro_zoomed3b.svg" %>%
milkunize2(), width = 8, height = 7)
r_intro_zoomed3b
dev.off()
##################################
# Remaking the plots
p <- ggplot() +
geom_hline(yintercept = 0,
size = 0.5,
color = "grey80",
# alpha = 0.75,
# linetype = "dashed",
NULL) +
geom_vline(xintercept = 0,
size = 0.5,
# alpha = 0.75,
color = "grey80",
# linetype = "dashed",
NULL) +
geom_abline(size = 0.2, linetype = "dashed") +
# geom_point() +
theme_minimal() +
# scale_color_jco() +
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_line(linetype = "dashed"),
panel.background = element_blank(),
axis.text = element_text(size = 14),
axis.title = element_text(size = 18),
plot.margin=unit(c(1,1,1.5,1.2),"cm"),
# legend.position = "top",
# axis.line = element_line(colour = "black"),
NULL) +
labs(x = "Decrease (%) Increase (%)\nCombined effect",
y = "Additive effect\nDecrease (%) Increase (%)") +
xlim(-100, 100) +
ylim(-100, 100) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-25, 55, 55, -25),
# label = c("Combined\nAdditive", "Combined\nAdditive",
# "Combined\nAdditive", "Combined\nAdditive"), color = "black",
# angle = 90, size = 4) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-30, 55, 55, -30),
# label = c("C A", "C A",
# "C A", "C A"), color = "black", size = 9) +
# annotate("text", x = c(-85, 85, -85, 85), y = c(-40, 40, 40, -40),
# label = c("--", "++", "+-", "-+"), color = "#B82B22", size = 26, fontface = "bold") +
NULL
triangle_x1 <- data.table(group = c(1,1,1),
polygon.x = c(0,100,100),
polygon.y = c(0,100,0))
triangle_y1 <- data.table(group = c(1,1,1),
polygon.x = c(0,100,0),
polygon.y = c(100,100,0))
#
triangle_x2 <- data.table(group = c(1,1,1),
polygon.x = c(-100,0, 0),
polygon.y = c(-100,-100,0))
triangle_y2 <- data.table(group = c(1,1,1),
polygon.x = c(-100,-100,0),
polygon.y = c(0,-100,0))
#
triangle_x3 <- data.table(group = c(1,1,1),
polygon.x = c(-100,-100, 0),
polygon.y = c(100,0,0))
triangle_y3 <- data.table(group = c(1,1,1),
polygon.x = c(-100, 0, 0),
polygon.y = c(100, 100,0))
#
triangle_x4 <- data.table(group = c(1,1,1),
polygon.x = c(0, 100, 0),
polygon.y = c(0, -100, -100))
triangle_y4 <- data.table(group = c(1,1,1),
polygon.x = c(0, 100, 100),
polygon.y = c(0, 0, -100))
####
blue <- "#91bfdb"
red <- "#fc8d59"
p1 <- p +
geom_polygon(data = triangle_y1, aes(x = polygon.x,y = polygon.y, group = group),
fill = red,
alpha = 0.5) +
geom_polygon(data = triangle_x1, aes(x = polygon.x,y = polygon.y, group = group),
fill = blue,
alpha = 0.5) +
geom_polygon(data = triangle_y2, aes(x = polygon.x,y = polygon.y, group = group),
fill = red,
alpha = 0.5) +
geom_polygon(data = triangle_x2, aes(x = polygon.x,y = polygon.y, group = group),
fill = blue,
alpha = 0.5) +
# geom_polygon(data = triangle_y3, aes(x = polygon.x,y = polygon.y, group = group),
# fill = blue,
# alpha = 0.5) +
# geom_polygon(data = triangle_x3, aes(x = polygon.x,y = polygon.y, group = group),
# fill = red,
# alpha = 0.5) +
# geom_polygon(data = triangle_y4, aes(x = polygon.x,y = polygon.y, group = group),
# fill = blue,
# alpha = 0.5) +
# geom_polygon(data = triangle_x4, aes(x = polygon.x,y = polygon.y, group = group),
# fill = red,
# alpha = 0.5) +
NULL
p1 + annotate("text", x = -20, y = 20,
label = "Additive effect\ngreater than combined",
color = "grey30",
angle = 45,
size = 10)
r_intro_zoomed2b <- r_intro_zoomed2 +
annotate("text", x = 40, y = 60,
label = "Additive effect\ngreater than combined",
color = "grey30",
angle = 40,
size = 10)
# r_intro_zoomed2
r_intro_zoomed3 <- r_intro_zoomed2b
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