compute_ploidy: Identify ploidy for samples
In MissionBio/tapestriR: Analysis of Data Generated by the Tapestri Platform
Description
Usage
Arguments
Value
View source: R/dna_reads_normalization.R
Description
Identify ploidy for samples
Usage
1
compute_ploidy(reads, clusters, baseline_cluster)
Arguments
reads
dna read counts matrix
clusters
vector with labels for which cluster each cell belongs to
baseline_cluster
one cluster label assumed to be the normal cell population with ploidy 2.
Value
normalized read counts centered around ploidy 2. amplicons with low read counts are removed
MissionBio/tapestriR documentation built on Feb. 25, 2021, 8:29 p.m.
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Description Usage Arguments Value
View source: R/dna_reads_normalization.R
Description
Identify ploidy for samples
Usage
1 | compute_ploidy(reads, clusters, baseline_cluster)
|
Arguments
reads |
dna read counts matrix |
clusters |
vector with labels for which cluster each cell belongs to |
baseline_cluster |
one cluster label assumed to be the normal cell population with ploidy 2. |
Value
normalized read counts centered around ploidy 2. amplicons with low read counts are removed
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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