define_subclones: define subclones based on NGT values
In MissionBio/tapestriR: Analysis of Data Generated by the Tapestri Platform
View source: R/define_subclones.R
Description
Similar to how Tapestri Insights v2.2 calculates subclones
Usage
1
define_subclones(assay, small_subclone = 0.01, ignore_zygosity = FALSE)
Arguments
assay
Assay object for DNA variants
small_subclone
threshold (%) for considering subclones too small
ignore_zygosity
collapse HET/HOM to just mutated
MissionBio/tapestriR documentation built on Feb. 25, 2021, 8:29 p.m.
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View source: R/define_subclones.R
Description
Similar to how Tapestri Insights v2.2 calculates subclones
Usage
1 | define_subclones(assay, small_subclone = 0.01, ignore_zygosity = FALSE)
|
Arguments
assay |
Assay object for DNA variants |
small_subclone |
threshold (%) for considering subclones too small |
ignore_zygosity |
collapse HET/HOM to just mutated |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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