lollipop: Tables needed for lollipop plot

In ModelOriented/EIX: Explain Interactions in 'XGBoost'

Description

This function calculates two tables needed to generate lollipop plot, which visualise the model. The first table contains information about all nodes in the trees forming a model. It includes gain value, depth and ID of each nodes. The second table contains similarly information about roots in the trees.

Usage

lollipop(xgb_model, data)

Arguments

xgb_model	a xgboost or lightgbm model.
data	a data table with data used to train the model.

Value

an object of the lollipop class

Examples

library("EIX")
library("Matrix")
sm <- sparse.model.matrix(left ~ . - 1,  data = HR_data)

library("xgboost")
param <- list(objective = "binary:logistic", max_depth = 2)
xgb_model <- xgboost(sm, params = param, label = HR_data[, left] == 1, nrounds = 25, verbose = 0)

lolli <- lollipop(xgb_model, sm)
plot(lolli, labels = "topAll", log_scale = TRUE)


library(lightgbm)
train_data <- lgb.Dataset(sm, label =  HR_data[, left] == 1)
params <- list(objective = "binary", max_depth = 2)
lgb_model <- lgb.train(params, train_data, 25)

lolli <- lollipop(lgb_model, sm)
plot(lolli, labels = "topAll", log_scale = TRUE)

ModelOriented/EIX documentation built on Feb. 16, 2021, 10:50 a.m.