Man pages for MollahLab/gen3DNet
An R Package for Generating 3D Network Models
| create_gen3DNet | Create a general 3D network. |
| gen3DNet | Create a 3D network model. |
| generate_nmf_modules | Generate NMF Modules |
| generate_plsr | Identify significant PLSR coefficients for pairs of left and... |
| kneedle | Find the knee/elbow point in a vector using the Kneedle... |
| kneedle_cophenetic | Pick k based on the knee point in the cophenetic correlation |
| kneedle_silhouette_consensus | Pick k based on the knee point in the silhouette score |
| max_cophenetic | Pick k based on the maximum cophenetic score |
| max_silhouette_consensus | Pick k based on the maximum silhouette score |
| max_ward_kl | Pick k based on the maximum KL index of Ward clusterings |
| normalize_nmf | Normalize NMF |
| scale_0_1 | Scale 0 to 1 |
| user_pick_k | User picks k |
| write_all_to_disk | Write a nested list as nested folders, with data.frame... |
