max_cophenetic: Pick k based on the maximum cophenetic score

View source: R/gen3DNet.R

max_copheneticR Documentation

Pick k based on the maximum cophenetic score

Description

This function uses the cophenetic correlation (Lessig 1972), which is implemented in the NMF library (Gaujoux 2010).

Usage

max_cophenetic(data, k_range)

Arguments

data

The data with an unknown number of clusters.

k_range

The range of possible k values

Value

The chosen value of k.


MollahLab/gen3DNet documentation built on Nov. 18, 2024, 5:08 a.m.