Man pages for Moonerss/ProteinBase
| check_log2 | Check whether log2 transformed |
| decompress | decompress files |
| get_color_palette | get color themes |
| group_diff | run differential expression analysis by group |
| log2expr | log2 transformation of expression matrix |
| na_ratio | NA ratio in data |
| na_ratio_col | NA ratio of each column in data |
| na_ratio_row | NA ratio of each row in data |
| normalize_data | Normalize data with different method |
| pipe | Pipe operator |
| plot_density | Plot data density curve |
| plot_density_by_sample | Plot data density curve of each sample by facet |
| plot_pca | PCA analysis of data |
| plot_venn | Draw Venn plot |
| qc_boxplot | Plot the data distribution of each sample |
| quantile_normalize | Quantile normalization of data |
| read_all_file | Read all file under dictionary in a batch |
| read_all_sheets | Read all sheets in an excel file |
| scale_normalize | Normalize data by median value or mean value |
| T_test | Do t-test |
| tumor_vs_normal | Tumor vs Normal Adjust tumor expression by Normal sample... |
| two_comp_normalize | Two component normalize of data |
| vsn_normalize | VSN normalization of data |
| Wilcox_test | Do Wilcox-test |
