normalize_data: Normalize data with different method

Description Usage Arguments See Also

View source: R/normalize.R

Description

Normalize data with different method

Usage

1
2
3
4
normalize_data(
  data_matrix,
  method = c("median-MAD", "zscore", "VSN", "quantile", "2-component")
)

Arguments

data_matrix

The data matrix with column in sample and row in feature

method

different methods to normalize data.

median-MAD

median-centering followed by median absolute deviation (MAD) scaling

zscore

mean-centering followed by standard deviation scaling

VSN

use VSN method normalize data

quantile

use quantile normalization method normalize data

2-component

use 2-component gaussian mixture model normalize data

See Also

justvsn


Moonerss/ProteinBase documentation built on Dec. 17, 2021, 4:21 a.m.