differential expression analysis by group
1 2 3 4 5 6 7 8 9 | group_diff(
data,
group,
method = c("wilcox", "Ttest"),
log2FC = 1,
pval = 0.05,
fdr = 0.05,
part = c("all", "up", "down")
)
|
data |
the data matrix to calculate the SD. For the matrix, the rows represent the genomic features, and the columns represents the samples. |
group |
A data frame contain two columns. The first column is sample name matched with colnames of data, The second column is the cluster label of samples. |
method |
The methods to calculate the differential features |
log2FC |
The log2 fold change cutoff, default 1 |
pval |
The p value cutoff, default 0.05 |
fdr |
The FDR cutoff, default 0.05 |
part |
Select the unregulated features |
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